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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
2
DNase-seq
single cell RNA-seq
Assay category
56
Transcription
47
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
February, 2020
June, 2019
Available data
100
bam
83
bigWig
72
bed narrowPeak
56
tsv
23
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
137
Homo sapiens
Biosample type
69
tissue
66
cell line
2
primary cell
Organ
868
pancreas
788
liver
662
connective tissue
490
adipose tissue
434
epithelium
253
brain
225
heart
223
vasculature
219
blood vessel
209
kidney
159
bone element
137
artery
90
limb
69
blood
69
bodily fluid
54
eye
52
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
126
GRCh38
91
hg19
Lab
137
AMP-T2D consortium
month_released!
June, 2019
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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