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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
45
ATAC-seq
34
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
47
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
June, 2019
Available data
99
bam
82
bigWig
72
bed narrowPeak
57
tsv
23
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
138
Homo sapiens
Biosample type
71
tissue
66
cell line
1
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
138
AMP-T2D consortium
organ_slims!
epithelium
month_released!
June, 2019
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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