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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
28
ChIP-seq
4
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
57
Transcription
49
DNA accessibility
28
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
21
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
1
March, 2020
Available data
96
bam
79
bigWig
66
bed narrowPeak
57
tsv
18
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
4
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
136
Homo sapiens
Biosample type
66
cell line
46
tissue
24
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
119
GRCh38
89
hg19
Lab
136
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
limb
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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