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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
33
ChIP-seq
23
total RNA-seq
8
DNase-seq
4
pCHi-C
2
single cell RNA-seq
1
RRBS
Assay category
73
DNA accessibility
33
DNA binding
25
Transcription
1
DNA methylation
Target of assay
23
histone
23
histone modification
14
broad histone mark
9
narrow histone mark
8
control
2
RNA binding protein
2
transcription factor
Date released
66
February, 2023
47
October, 2019
9
June, 2019
5
May, 2019
4
July, 2019
3
February, 2020
2
August, 2021
Available data
95
bed narrowPeak
43
bam
35
bigWig
31
bigBed narrowPeak
11
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
136
Homo sapiens
Biosample type
129
tissue
cell line
7
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
70
GRCh38
63
hg19
Lab
136
AMP-T2D consortium
organ_slims!
mammary gland
biosample_type!
cell line
BIOSAMPLE
ASSAY
136 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
RRBS
tissue
coronary artery
36
5
1
2
tibial artery
1
23
1
2
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
+ See 1 more…
primary cell
retinal pigment epithelial cell
3
1
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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