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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
45
ATAC-seq
20
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
49
DNA accessibility
20
DNA binding
2
Transcription
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
14
February, 2021
12
October, 2019
5
May, 2019
2
August, 2021
2
June, 2019
1
July, 2019
Available data
60
bed narrowPeak
34
bam
17
bigWig
11
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tsv
Organism
71
Homo sapiens
Biosample type
57
tissue
14
cell line
Organ
560
liver
465
pancreas
349
epithelium
279
kidney
264
heart
199
brain
166
connective tissue
130
vasculature
124
blood vessel
97
bone element
81
limb
73
adipose tissue
71
artery
70
musculature of body
69
blood
69
bodily fluid
42
eye
nerve
21
spleen
20
lung
19
embryo
18
ureter
13
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
60
GRCh38
25
hg19
Lab
71
AMP-T2D consortium
organ_slims!
nerve
assay_title!
total RNA-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
2
tibial artery
1
9
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
6
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