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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
25
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
91
bam
83
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
130
Homo sapiens
Biosample type
66
tissue
64
cell line
primary cell
Organ
670
liver
613
connective tissue
559
pancreas
465
adipose tissue
362
heart
309
kidney
240
brain
181
blood vessel
181
vasculature
158
bone element
130
artery
109
epithelium
105
limb
78
musculature of body
56
eye
55
blood
55
bodily fluid
nerve
30
embryo
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
126
GRCh38
91
hg19
Lab
130
AMP-T2D consortium
organ_slims!
nerve
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
18
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
4
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