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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
25
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
48
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
90
bam
82
bigWig
73
bed narrowPeak
56
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
129
Homo sapiens
Biosample type
65
tissue
64
cell line
Organ
887
pancreas
673
liver
631
connective tissue
481
epithelium
455
adipose tissue
348
heart
331
kidney
240
brain
202
vasculature
198
blood vessel
159
bone element
129
artery
100
limb
80
musculature of body
63
blood
63
bodily fluid
59
eye
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
129
AMP-T2D consortium
organ_slims!
nerve
target.investigated_as!
control
month_released!
July, 2019
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
35
3
2
tibial artery
1
1
18
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
4
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