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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
15
ChIP-seq
8
snATAC-seq
2
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
58
Transcription
15
DNA binding
9
DNA accessibility
Target of assay
15
control
Date released
54
February, 2021
8
January, 2021
5
October, 2019
3
January, 2019
3
November, 2018
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
1
January, 2018
1
March, 2020
Available data
162
bam
140
bigWig
bed narrowPeak
79
bigBed narrowPeak
60
fastq
59
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
83
Homo sapiens
Biosample type
61
cell line
12
tissue
10
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
75
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
83 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
2
GM12878
6
1
tissue
tibial artery
1
5
coronary artery
1
2
pulmonary artery
2
adrenal gland
1
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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