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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ATAC-seq
19
ChIP-seq
8
snATAC-seq
2
single cell RNA-seq
Assay category
58
Transcription
54
DNA accessibility
19
DNA binding
Target of assay
15
control
4
transcription factor
Date released
66
February, 2021
35
February, 2023
8
January, 2021
6
October, 2019
3
January, 2019
3
July, 2019
3
November, 2018
2
August, 2021
2
February, 2020
2
May, 2019
1
January, 2018
Available data
162
bam
140
bigWig
128
bed narrowPeak
bigBed narrowPeak
60
fastq
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
73
cell line
48
tissue
10
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
8
T1D
Genome assembly (visualization)
103
GRCh38
69
hg19
Lab
123
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
GM12878
1
6
tissue
coronary artery
1
36
2
tibial artery
1
1
5
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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