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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
56
total RNA-seq
46
ATAC-seq
18
snATAC-seq
11
single cell RNA-seq
4
DNase-seq
1
pCHi-C
Assay category
94
DNA binding
68
DNA accessibility
67
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
66
February, 2021
35
February, 2023
27
December, 2018
26
October, 2019
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
1
March, 2020
Available data
162
bam
140
bigWig
128
bed narrowPeak
79
bigBed narrowPeak
60
fastq
59
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
229
Homo sapiens
Biosample type
127
cell line
93
tissue
10
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
203
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
182
GRCh38
148
hg19
Lab
203
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
230 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
lung
10
9
1
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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