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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
61
total RNA-seq
47
ATAC-seq
8
snATAC-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
129
DNA binding
63
Transcription
61
DNA accessibility
Target of assay
56
transcription factor
45
histone
45
histone modification
30
broad histone mark
26
control
15
narrow histone mark
11
RNA binding protein
10
chromatin remodeller
Date released
68
October, 2019
66
February, 2021
35
February, 2023
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
1
January, 2018
Available data
204
bam
171
bigWig
155
bed narrowPeak
105
bigBed narrowPeak
63
tsv
60
fastq
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
253
Homo sapiens
Biosample type
127
cell line
116
tissue
10
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
245
AMP
8
T1D
Genome assembly (visualization)
213
GRCh38
179
hg19
Lab
245
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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