Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
84
RNA microarray
57
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
118
Transcription
61
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
216
February, 2021
43
February, 2023
26
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
166
bam
141
bigWig
114
tsv
88
txt
82
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
297
Homo sapiens
Biosample type
231
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
297
AMP
Genome assembly (visualization)
192
GRCh38
161
hg19
Lab
297
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
297 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
36
5
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
See all biosamples
Download