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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
61
ATAC-seq
36
ChIP-seq
7
DNase-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
74
Transcription
68
DNA accessibility
36
DNA binding
Target of assay
22
histone
22
histone modification
14
broad histone mark
9
control
8
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
52
February, 2023
47
October, 2019
5
June, 2019
5
May, 2019
3
February, 2020
2
August, 2021
2
July, 2019
Available data
104
bam
92
bed narrowPeak
87
bigWig
60
tsv
28
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
Organism
182
Homo sapiens
Biosample type
115
tissue
66
cell line
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
Genome assembly (visualization)
130
GRCh38
110
hg19
Lab
182
AMP-T2D consortium
organ_slims!
epithelium
BIOSAMPLE
ASSAY
182 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
islet of Langerhans
14
1
2
4
retina
3
15
3
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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