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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
72
ATAC-seq
30
ChIP-seq
8
DNase-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
80
DNA accessibility
75
Transcription
30
DNA binding
Target of assay
23
histone
23
histone modification
14
broad histone mark
10
control
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
66
February, 2023
41
October, 2019
8
June, 2019
July, 2019
3
February, 2020
3
May, 2019
2
August, 2021
Available data
99
bam
99
bed narrowPeak
81
bigWig
61
tsv
24
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
Organism
189
Homo sapiens
Biosample type
120
tissue
66
cell line
3
primary cell
Organ
867
pancreas
721
liver
633
connective tissue
467
adipose tissue
462
epithelium
328
heart
328
kidney
198
vasculature
194
blood vessel
159
bone element
151
brain
132
artery
102
limb
73
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
189
AMP
Genome assembly (visualization)
124
GRCh38
116
hg19
Lab
189
AMP-T2D consortium
target.investigated_as!
narrow histone mark
month_released!
July, 2019
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
35
3
2
tibial artery
1
1
19
2
retina
3
15
3
islet of Langerhans
14
1
4
pigmented layer of retina
2
12
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
retinal pigment epithelial cell
2
1
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