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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
95
single cell RNA-seq
69
total RNA-seq
48
ATAC-seq
29
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
165
Transcription
112
DNA binding
77
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
78
histone
78
histone modification
51
broad histone mark
27
narrow histone mark
23
control
11
transcription factor
5
RNA binding protein
Date released
94
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
34
October, 2019
27
June, 2019
21
May, 2019
20
July, 2019
7
March, 2020
4
February, 2020
3
May, 2021
Available data
225
bam
195
bigWig
167
tsv
166
bed narrowPeak
108
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
369
Homo sapiens
Biosample type
302
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
369
AMP
Genome assembly (visualization)
237
GRCh38
199
hg19
Lab
369
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
369 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
tibial artery
23
1
1
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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