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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
62
total RNA-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
DNA accessibility
77
DNA binding
64
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
63
October, 2019
58
February, 2021
12
May, 2019
7
July, 2019
4
February, 2020
2
August, 2021
Available data
135
bam
114
bigWig
64
tsv
55
bed narrowPeak
51
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
146
Homo sapiens
Biosample type
86
tissue
58
cell line
2
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
146
AMP
Genome assembly (visualization)
113
GRCh38
113
hg19
Lab
146
AMP-T2D consortium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
WGBS
tissue
tibial nerve
35
5
tibial artery
23
1
muscle of leg
7
1
coronary artery
5
1
gastrocnemius medialis
1
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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