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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
38
ATAC-seq
36
DNase-seq
7
total RNA-seq
6
Hi-C
4
RRBS
3
single cell RNA-seq
1
WGBS
1
pCHi-C
1
small RNA-seq
1
snATAC-seq
Assay category
75
DNA accessibility
57
DNA binding
11
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
45
histone
45
histone modification
30
broad histone mark
15
narrow histone mark
11
control
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
34
June, 2019
26
August, 2017
26
October, 2019
12
May, 2019
8
July, 2019
5
March, 2020
4
February, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
113
bed narrowPeak
84
bigWig
78
bam
63
bigBed narrowPeak
49
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
15
tagAlign
11
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
155
Homo sapiens
Biosample type
155
tissue
66
cell line
16
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
104
GRCh38
88
hg19
Lab
155
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
coronary artery
5
36
2
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
pulmonary artery
2
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
See all biosamples
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