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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
total RNA-seq
84
RNA microarray
69
ChIP-seq
58
ATAC-seq
6
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
125
Transcription
69
DNA binding
64
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
216
February, 2021
68
October, 2019
43
February, 2023
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
1
May, 2021
Available data
210
bam
174
bigWig
121
tsv
109
bed narrowPeak
88
txt
51
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
4
bed bed3
Organism
343
Homo sapiens
Biosample type
274
tissue
66
cell line
3
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
342
AMP
1
T1D
Genome assembly (visualization)
225
GRCh38
194
hg19
Lab
342
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
BIOSAMPLE
ASSAY
343 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
5
36
2
tibial nerve
5
35
1
2
tibial artery
1
23
1
2
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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