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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
65
total RNA-seq
58
ATAC-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
69
DNA binding
67
Transcription
64
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
68
October, 2019
43
February, 2023
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
Available data
152
bam
116
bigWig
109
bed narrowPeak
63
tsv
51
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
4
bed bed3
4
txt
Organism
200
Homo sapiens
Biosample type
132
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
200
AMP
Genome assembly (visualization)
167
GRCh38
136
hg19
Lab
200
AMP-T2D consortium
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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