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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
62
total RNA-seq
53
ATAC-seq
38
DNase-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
91
DNA accessibility
78
DNA binding
64
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
21
control
18
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
February, 2021
71
October, 2019
35
February, 2023
34
June, 2019
12
May, 2019
8
July, 2019
4
February, 2020
2
August, 2021
Available data
191
bam
156
bigWig
146
bed narrowPeak
89
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
7
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
238
Homo sapiens
Biosample type
170
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
204
GRCh38
169
hg19
Lab
238
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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