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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
56
ATAC-seq
11
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
62
Transcription
58
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
84
bam
64
bigWig
61
bed narrowPeak
58
tsv
6
tagAlign
5
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
66
cell line
63
tissue
2
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
131
AMP
Genome assembly (visualization)
115
GRCh38
84
hg19
Lab
131
AMP-T2D consortium
month_released!
October, 2019
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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