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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ChIP-seq
46
ATAC-seq
5
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
51
DNA accessibility
2
DNA methylation
Date released
60
February, 2021
35
February, 2023
3
July, 2019
3
November, 2018
3
October, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
72
bam
64
bigWig
59
tsv
51
bed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
5
bigBed narrowPeak
4
fastq
2
bed bedMethyl
2
bigBed bedMethyl
Organism
112
Homo sapiens
Biosample type
60
cell line
50
tissue
2
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
107
GRCh38
70
hg19
Lab
112
AMP-T2D consortium
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
2
spleen
1
1
2
1
tibial artery
1
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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