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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
54
total RNA-seq
46
ATAC-seq
5
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
54
DNA binding
51
DNA accessibility
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
1
March, 2020
1
October, 2017
Available data
124
bam
99
bigWig
88
bed narrowPeak
57
tsv
38
bigBed narrowPeak
24
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
164
Homo sapiens
Biosample type
98
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
142
GRCh38
105
hg19
Lab
164
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
52
8
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