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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
47
ChIP-seq
46
ATAC-seq
5
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
51
DNA accessibility
47
DNA binding
Target of assay
26
histone
26
histone modification
18
broad histone mark
13
control
8
narrow histone mark
8
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
December, 2018
7
January, 2019
7
November, 2018
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
119
bam
98
bigWig
85
bed narrowPeak
59
tsv
35
bigBed narrowPeak
17
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
bigBed bedMethyl
Organism
157
Homo sapiens
Biosample type
89
tissue
66
cell line
2
primary cell
Organ
940
pancreas
787
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
60
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
139
GRCh38
104
hg19
Lab
157
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
month_released!
December, 2018
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
spleen
13
1
1
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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