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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ATAC-seq
43
ChIP-seq
5
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
51
DNA accessibility
43
DNA binding
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
7
January, 2019
4
December, 2018
4
May, 2019
4
November, 2018
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
115
bam
90
bigWig
77
bed narrowPeak
59
tsv
31
bigBed narrowPeak
18
fastq
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
bigBed bedMethyl
2
tagAlign
Organism
153
Homo sapiens
Biosample type
89
tissue
62
cell line
2
primary cell
Organ
921
pancreas
641
connective tissue
509
epithelium
472
adipose tissue
450
liver
368
heart
340
kidney
281
brain
225
vasculature
221
blood vessel
159
bone element
136
artery
121
limb
92
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
131
GRCh38
96
hg19
Lab
153
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
153 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
spleen
1
14
1
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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