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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
45
ATAC-seq
31
ChIP-seq
3
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
57
Transcription
48
DNA accessibility
31
DNA binding
2
DNA methylation
Target of assay
12
control
11
transcription factor
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
100
bam
80
bigWig
67
bed narrowPeak
58
tsv
24
fastq
18
bigBed narrowPeak
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
139
Homo sapiens
Biosample type
71
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
123
GRCh38
86
hg19
Lab
139
AMP-T2D consortium
organ_slims!
limb
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
2
spleen
1
20
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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