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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
25
ChIP-seq
22
DNase-seq
2
single cell RNA-seq
Assay category
67
DNA accessibility
58
Transcription
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
20
June, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
111
bam
103
bigWig
92
bed narrowPeak
58
tsv
43
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
4
tagAlign
Organism
150
Homo sapiens
Biosample type
84
tissue
64
cell line
2
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
146
GRCh38
111
hg19
Lab
150
AMP-T2D consortium
target.investigated_as!
control
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
18
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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