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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
22
DNase-seq
11
ChIP-seq
2
single cell RNA-seq
Assay category
67
DNA accessibility
58
Transcription
11
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
20
June, 2019
7
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
97
bam
89
bigWig
78
bed narrowPeak
58
tsv
29
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
4
tagAlign
Organism
136
Homo sapiens
Biosample type
70
tissue
64
cell line
2
primary cell
Organ
815
pancreas
641
liver
605
connective tissue
450
epithelium
447
adipose tissue
327
kidney
316
heart
185
brain
169
vasculature
164
blood vessel
159
bone element
118
artery
71
limb
70
musculature of body
63
blood
63
bodily fluid
60
eye
26
embryo
20
lung
18
ureter
16
nerve
16
skeleton
13
spleen
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
132
GRCh38
97
hg19
Lab
136
AMP-T2D consortium
target.investigated_as!
control
broad histone mark
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
3
renal pelvis
10
tibial artery
1
1
2
4
left renal pelvis
4
right renal pelvis
4
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cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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