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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
45
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
49
DNA accessibility
14
DNA binding
2
Transcription
Target of assay
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
14
February, 2021
8
October, 2019
3
May, 2019
2
August, 2021
2
June, 2019
1
July, 2019
Available data
54
bed narrowPeak
28
bam
11
bigWig
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tsv
Organism
65
Homo sapiens
Biosample type
51
tissue
14
cell line
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
219
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
54
GRCh38
19
hg19
Lab
65
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
3
2
tibial artery
1
5
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
6
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