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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
48
DNA accessibility
14
DNA binding
Target of assay
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
8
October, 2019
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
79
bam
62
bigWig
56
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
66
cell line
52
tissue
Organ
789
pancreas
679
liver
588
connective tissue
447
adipose tissue
418
epithelium
313
kidney
266
heart
159
bone element
153
vasculature
149
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
53
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
118
AMP-T2D consortium
target.investigated_as!
histone
month_released!
July, 2019
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
35
3
2
tibial artery
1
1
5
2
pulmonary artery
2
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