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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
32
total RNA-seq
30
ChIP-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
56
DNA accessibility
35
Transcription
30
DNA binding
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
35
February, 2023
28
August, 2017
22
August, 2021
3
February, 2020
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
May, 2020
Available data
bam
369
bigWig
232
tsv
181
bed narrowPeak
138
fastq
88
tagAlign
68
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
137
Homo sapiens
Biosample type
112
tissue
23
cell line
2
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
177
heart
98
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
35
GRCh38
29
hg19
Lab
77
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
target.investigated_as!
transcription factor
files.file_type!
bam
BIOSAMPLE
ASSAY
137 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
single cell RNA-seq
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
20
20
23
1
3
1
1
1
coronary artery
35
1
right lobe of liver
1
1
1
pulmonary artery
2
tibial artery
1
cell line
HepG2
9
7
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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