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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
9
DNase-seq
Assay category
14
DNA binding
9
DNA accessibility
Target of assay
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
14
November, 2017
4
June, 2019
3
November, 2018
2
October, 2019
Available data
452
bam
369
bigWig
232
tsv
181
bed narrowPeak
138
fastq
88
tagAlign
68
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
23
Homo sapiens
Biosample type
14
cell line
7
tissue
2
primary cell
Organ
78
kidney
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
19
liver
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
23
AMP
Genome assembly (visualization)
23
hg19
21
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
cell line
HepG2
14
tissue
coronary artery
2
liver
2
tibial artery
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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