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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
48
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
94
bam
77
bigWig
68
bed narrowPeak
56
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
133
Homo sapiens
Biosample type
71
tissue
62
cell line
Organ
921
pancreas
626
connective tissue
502
epithelium
462
adipose tissue
443
liver
351
heart
333
kidney
265
brain
215
vasculature
211
blood vessel
159
bone element
133
artery
117
limb
86
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
120
GRCh38
85
hg19
Lab
133
AMP-T2D consortium
target.investigated_as!
transcription factor
organ_slims!
bone marrow
month_released!
July, 2019
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
35
4
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
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