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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
Hi-C
2
total RNA-seq
Assay category
20
DNA binding
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
18
October, 2019
4
July, 2019
3
November, 2017
1
March, 2020
Available data
22
bam
19
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
Organism
26
Homo sapiens
Biosample type
90
tissue
58
cell line
26
primary cell
Organ
315
epithelium
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
26
AMP
Genome assembly (visualization)
21
hg19
14
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
pancreas
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
Hi-C
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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