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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
19
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
43
DNA accessibility
19
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
35
February, 2023
14
May, 2019
8
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
46
bed narrowPeak
33
bam
16
bigWig
14
tsv
8
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
79
Homo sapiens
Biosample type
79
tissue
66
cell line
15
primary cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
51
GRCh38
16
hg19
Lab
79
AMP-T2D consortium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
3
1
2
aorta
2
1
4
2
1
1
tibial artery
1
5
1
2
thoracic aorta
1
5
2
ascending aorta
4
2
1
pulmonary artery
2
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