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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
225
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
169
histone
169
histone modification
108
narrow histone mark
61
broad histone mark
54
transcription factor
13
RNA binding protein
10
chromatin remodeller
3
control
Date released
78
October, 2019
63
November, 2017
30
June, 2019
27
December, 2018
25
May, 2019
15
January, 2019
14
November, 2018
12
July, 2019
7
October, 2017
Available data
269
bam
268
bigWig
255
bed narrowPeak
180
bigBed narrowPeak
82
tagAlign
69
fastq
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
12
tsv
1
tagAlign bed3+
Organism
271
Homo sapiens
Biosample type
203
tissue
54
cell line
14
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
271
AMP
Genome assembly (visualization)
271
GRCh38
219
hg19
Lab
271
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
271 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
cell line
GM12878
54
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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