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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
49
ATAC-seq
47
WGBS
8
snATAC-seq
3
Hi-C
2
ChIP-seq
Assay category
57
DNA accessibility
55
Transcription
47
DNA methylation
3
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
80
May, 2022
37
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
3
March, 2020
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
69
fastq
14
bigWig
8
tsv
4
bam
3
bedpe bed3+
3
cool
3
hic
2
bed narrowPeak
Organism
164
Homo sapiens
Biosample type
160
primary cell
4
cell line
Organ
186
pancreas
156
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
152
HPAP
12
T1D
Genome assembly (visualization)
14
GRCh38
7
hg19
Lab
152
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
164 results
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total RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
cell line
EndoC_BH1
2
2
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