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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
99
DNA binding
53
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
50
histone
50
histone modification
34
broad histone mark
26
transcription factor
23
control
16
narrow histone mark
8
RNA binding protein
8
chromatin remodeller
Date released
69
October, 2019
32
June, 2019
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
January, 2018
Available data
147
bam
119
bed narrowPeak
119
bigWig
111
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
33
fastq
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
163
Homo sapiens
Biosample type
121
tissue
34
cell line
8
primary cell
Organ
940
pancreas
787
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
60
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
155
AMP
8
T1D
Genome assembly (visualization)
124
hg19
122
GRCh38
Lab
155
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
cell line
GM12878
33
1
primary cell
peripheral blood mononuclear cell
8
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