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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
45
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
Available data
53
bam
50
bed narrowPeak
45
fastq
43
bigWig
42
bigBed narrowPeak
4
bed bed3
4
txt
Organism
70
Homo sapiens
Biosample type
46
cell line
16
tissue
8
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
55
hg19
50
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
45
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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