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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
27
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
25
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
27
December, 2018
January, 2019
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
Available data
35
bam
35
bed narrowPeak
28
bigWig
27
bigBed narrowPeak
27
fastq
4
bed bed3
4
txt
Organism
52
Homo sapiens
Biosample type
28
cell line
16
tissue
8
primary cell
Organ
939
pancreas
733
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
37
embryo
36
blood
36
bodily fluid
22
vein
20
lung
18
ureter
16
skeleton
9
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
8
T1D
Genome assembly (visualization)
40
hg19
35
GRCh38
Lab
44
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
January, 2019
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
27
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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