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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
44
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
histone modification
1
narrow histone mark
Date released
27
December, 2018
17
January, 2019
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
Available data
52
bam
49
bed narrowPeak
44
fastq
42
bigWig
41
bigBed narrowPeak
4
bed bed3
4
txt
Organism
69
Homo sapiens
Biosample type
45
cell line
16
tissue
8
primary cell
Organ
788
pancreas
635
liver
605
connective tissue
458
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
97
brain
73
limb
63
musculature of body
58
eye
53
blood
53
bodily fluid
25
embryo
20
lung
19
nerve
18
ureter
16
skeleton
10
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
8
T1D
Genome assembly (visualization)
54
hg19
49
GRCh38
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
44
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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