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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
2
ATAC-seq
1
pCHi-C
Assay category
59
DNA binding
10
DNA accessibility
Target of assay
42
transcription factor
8
RNA binding protein
8
chromatin remodeller
8
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
34
December, 2018
25
January, 2019
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
60
bam
60
fastq
53
bigWig
52
bed narrowPeak
51
bigBed narrowPeak
1
tsv
Organism
70
Homo sapiens
Biosample type
46
cell line
16
tissue
8
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
organ_slims!
kidney
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
45
1
tissue
spleen
14
1
1
primary cell
peripheral blood mononuclear cell
8
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