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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
8
snATAC-seq
7
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
133
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
8
January, 2021
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
November, 2019
1
October, 2017
1
October, 2019
Available data
104
bam
104
fastq
82
bigWig
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
158
Homo sapiens
Biosample type
89
tissue
61
cell line
8
primary cell
1
in vitro differentiated cells
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
151
AMP
8
T1D
Genome assembly (visualization)
82
hg19
79
GRCh38
Lab
151
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
+ See 1 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
white fat cell
1
See all biosamples
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