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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
97
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
97
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
68
transcription factor
25
control
15
RNA binding protein
10
chromatin remodeller
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
27
December, 2018
23
October, 2018
18
January, 2019
17
August, 2017
16
November, 2018
12
July, 2019
1
June, 2019
1
November, 2019
1
October, 2017
Available data
502
bam
480
bigWig
401
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
502
Homo sapiens
Biosample type
440
tissue
60
cell line
2
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
502
AMP
Genome assembly (visualization)
477
GRCh38
475
hg19
Lab
502
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
502 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
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cell line
GM12878
60
primary cell
mesenchymal stem cell of adipose
1
1
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