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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
9
DNase-seq
4
ATAC-seq
Assay category
69
DNA binding
13
DNA accessibility
Target of assay
57
transcription factor
16
RNA binding protein
10
chromatin remodeller
10
histone
10
histone modification
6
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
15
January, 2019
15
June, 2019
13
November, 2018
5
October, 2018
3
August, 2017
3
October, 2019
1
November, 2020
Available data
653
bam
625
bigWig
478
tsv
161
fastq
129
bed narrowPeak
82
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
82
Homo sapiens
Biosample type
54
cell line
15
primary cell
10
tissue
3
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
82
AMP
Genome assembly (visualization)
81
hg19
79
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
inconsistent control
organ_slims!
artery
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
GM12878
54
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
3
2
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
adipocyte
1
2
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