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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
28
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
13
control
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
3
January, 2019
3
November, 2018
2
January, 2018
2
May, 2021
Available data
96
bam
87
fastq
84
bigWig
68
bed narrowPeak
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
52
Homo sapiens
Biosample type
29
in vitro differentiated cells
15
cell line
8
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
8
T1D
Genome assembly (visualization)
30
hg19
29
GRCh38
1
hg18
Lab
44
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
GM12878
6
1
primary cell
peripheral blood mononuclear cell
8
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