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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
14
total RNA-seq
8
snATAC-seq
Assay category
82
DNA binding
14
Transcription
8
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
January, 2018
2
May, 2021
Available data
96
bam
86
fastq
82
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
104
Homo sapiens
Biosample type
68
cell line
28
in vitro differentiated cells
8
primary cell
Organ
946
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
8
T1D
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
96
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
January, 2018
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
total RNA-seq
snATAC-seq
cell line
GM12878
60
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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