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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
3
MeRIP-seq
Assay category
33
DNA binding
Target of assay
94
histone
94
histone modification
60
transcription factor
50
narrow histone mark
44
broad histone mark
36
control
18
RNA binding protein
11
chromatin remodeller
3
nucleotide modification
Date released
12
August, 2017
3
December, 2017
3
January, 2019
3
November, 2018
3
November, 2020
3
October, 2019
2
June, 2019
2
November, 2017
2
November, 2019
1
August, 2021
1
May, 2019
1
May, 2021
Available data
33
bam
23
fastq
2
bigWig
2
tagAlign
Organism
36
Homo sapiens
Biosample type
21
primary cell
11
cell line
4
in vitro differentiated cells
Organ
108
liver
53
pancreas
35
connective tissue
31
brain
30
epithelium
24
adipose tissue
22
vasculature
21
blood vessel
20
heart
17
limb
12
kidney
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
6
musculature of body
2
vein
1
eye
Project
36
AMP
Genome assembly (visualization)
2
hg19
Lab
33
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
MeRIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
2
brain microvascular endothelial cell
1
+ See 4 more…
cell line
GM12878
6
EndoC_BH1
2
3
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
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