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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
14
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
65
DNA binding
41
DNA accessibility
14
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
27
December, 2018
27
February, 2023
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
61
cell line
51
tissue
13
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
117
AMP
8
T1D
Genome assembly (visualization)
89
hg19
60
GRCh38
Lab
117
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
tsv
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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