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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
48
ATAC-seq
30
DNase-seq
8
WGBS
8
snATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
154
DNA binding
86
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
63
histone
63
histone modification
63
transcription factor
37
broad histone mark
26
control
26
narrow histone mark
16
RNA binding protein
10
chromatin remodeller
Date released
57
April, 2019
35
February, 2023
35
June, 2019
27
December, 2018
21
May, 2019
18
January, 2019
15
November, 2018
14
February, 2021
14
July, 2019
8
January, 2021
6
October, 2019
5
March, 2020
1
January, 2018
Available data
205
bed narrowPeak
201
bam
169
bigWig
148
bigBed narrowPeak
60
fastq
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
256
Homo sapiens
Biosample type
164
tissue
75
cell line
17
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
248
AMP
8
T1D
Genome assembly (visualization)
210
GRCh38
173
hg19
Lab
248
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
assay_slims!
Transcription
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
snATAC-seq
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
1
2
+ See 2 more…
cell line
GM12878
60
1
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
peripheral blood mononuclear cell
8
See all biosamples
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